Review on genetic vs. plastic adaptation to climate change

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Review on genetic vs. plastic adaptation to climate change

General points

  • Maintenance of genetic variation
    • under stabilizing selection (G, HC, HG); problems
    • under fluctuating and directional selection (when does V_g increase)
    • insufficient genetic variation as constraint (Gomulkiewicz and Houle 2009)
  • Standing variation vs. new mutations:
    • How far with standing variation? (selection limit)
    • Open questions (see FWF project)
    • Methods: QG vs. SSWM

Questions in Barrett and Hendry (2012)

How important is genetic (as opposed to plastic) change?
  • We might ask: What is possible with genetic change only?
Will plasticity evolve?
  • Most likely yes:-)
  • Approaches: Lande 2009, earlier models from 1990s, Draghi and Whitlock
  • Baldwin effect etc.
Is evolution fast enough
  • How fast without plasticity?
  • Factors determining speed:
    • Genetic variance (large literature here)
    • Selection gradient
    • Multivariate constraints
    • Evolvability, complexity etc.
  • Evolutionary rescue
    • critical rates: explain
    • Explain Lynch and Lande (1993)
    • Key factors: selection gradient vs. mean fitness
    • Strong selection is a good thing with a moving optimum
    • additional factors: demographic and environmental stochasticity
Standing variation vs. new mutations?
  • Different theoretical approaches/traditions
  • Quantitative genetics vs. adaptive walks
  • Some results from quantitative genetics (Hill…)
  • Open questions
How many genes and what effect
  • Lots of recent interest in models of adaptive walks (from new mutations only)
  • Kopp and Hermisson 2009b: at least in univariate case, adaptive walk predictions are good approximations to quantitative genetic model
Constraints: limited genetic variation
  • models on maintenance of genetic variation
Constraints: Trait correlations
  • multivariate constraints
  • Fisher's model etc.
Constraints: Ultimate constraints
  • trade-offs?

Alternative list of questions

Introduction
  • What can theory contribute to the study of adaptation to climate change?
    • Identify important parameters
    • Suggest measures and scalings
    • Make rough predictions about quantitative change
  • What theory cannot do
    • Predict the ratio of genetic vs. genetic responses
    • Make exact quantitative predictions
  • Scope of this paper
    • Phenotypic evolution of quantitative change
    • Simple selective scenarios
    • Focus on rates
Methods
  • How should evolutionary change be measured?
    • Haldanes, Darwins,
    • mean- vs. variance standardization,
    • extrapolation to per-generation rates,
    • Price equation
  • How to model phenotypic evolution?
    • Quantitative genetics,
    • population genetics,
    • adaptive walks,
    • optimality, game theory,
    • adaptive dynamics
  • Which scenarios of environmental change have been considered?
    • sudden change,
    • moving optimum,
    • stochastic fluctuations
Univariate case
  • What is the genetic basis of adaptation?
    • Small or large mutations
    • Standing variation vs. new mutations
    • How much standing variation?
    • Evolution of standing variation during adaptation
  • Rate of adaptation
    • From standing variation (quantitative genetic models): Lande's equation
    • maximal rates?
    • From new mutations: fixation probability
  • Evolutionary rescue
    • from standing variation or new mutations
    • in models with sudden change
    • in models with moving optimum
    • critical rates of environmental change
Multivariate case
  • How to model multivariate evolution?
    • Multivariate Lande's/breeders' equation
    • Fisher's geometric model
    • Pleiotropic side effects
  • How many traits? (Organismal complexity)
  • What are the effects of multivariate mutation and selection?
    • G-matrix, M-matrix
    • Genetic line of least resistance
    • multivariate constraints
    • evolution of mean fitness
  • Evolvability
Plasticity
  • How to model plasticity?
  • How plastic are organisms?
  • How does plasticity interact with genetic evolution?
  • Does plasticity evolve during adaptation?
  • How does plasticity contribute to evolutionary rescue?
Open questions
  • Evolutionary change in a community context
    • Effects of plasticity (trait-mediated indirect effects etc.)
    • Eco-evolutionary dynamics

What can one say abouts phenotypic rates of adaptation from sgv?

Univariate case

  • Starting point: Lande's equation: selection gradient and additive variance
  • Lot's of literature on additive variance
  • Selection gradient vs. mean fitness: depends on fitness function
    • double exponential fitness function: selection gradient constant
  • Problem: How to deal with phenotypic variance and sampling error? For an observed change to be significant, the difference in haldanes must be <latex>(\bar x - \bar y)/\sigma_p > 1.96\sqrt(2/n)</latex>; for n = 100, this is 0.087.
  • check out Lande 1976, Hendry and Kinnison 1999, Gingerich 2009 for this
  • essentially dividing the Lande equation by sigma_p leads to standardized selection gradients, discussed and critized in Herford et al. 2004

Multivariate case

  • Multivariate Lande's equation
  • critized by Morrisey et al. 2010
  • Multivariate constraints: Walsh and Blows 2009

Narrative

What happens when a populations experiences environmental change, and which theoretical problems do we encounter along the way?

  • Before the change: maintenance of genetic variation (mutation-selection balance, fluctuating selection …)
  • Different kinds of environmental change
  • Adaptation from standing genetic variation
  • Adaptation from new mutations (unlikely)
  • Evolutionary rescue?
  • Plasticity
  • Which factors favor adaptation: genetic variation, plasticity, evolvability, modularity, lack of complexity