Review on genetic vs. plastic adaptation to climate change

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Review on genetic vs. plastic adaptation to climate change

Possible structure (potentially as list of questions)

Introduction
  • What can theory contribute to the study of adaptation to climate change?
    • Identify important parameters
    • Make rough predictions about quantitative change
    • Suggest measures and scalings
  • What theory cannot do
    • Predict the ratio of genetic vs. genetic responses
    • Make exact quantitative predictions
  • Scope of this paper
    • Phenotypic evolution of quantitative change
    • Simple selective scenarios
    • Focus on rates
Methods
  • How should evolutionary change be measured?
    • Darwins, haldanes, haldane numerators
    • mean- vs. variance standardization (Herford et al. 2004)
    • extrapolation to per-generation rates (Gingerich)
  • How to model phenotypic evolution?
    • Quantitative genetics (adaptation from standing genetic variation)
    • population genetics (adaptation by single large mutations)
    • adaptive walks (new mutations only)
    • optimality, game theory (not needed for simple scenarios considered here; relevant for evolution of plasticity)
    • adaptive dynamics (for evolution of plasticity, eco-evolutionary feedbacks)
  • Which scenarios of environmental change have been considered?
    • sudden change,
    • moving optimum,
    • stochastic fluctuations
    • increased variability
    • range shifts????
What is the genetic basis of adaptation?
  • Standing variation vs. new mutations
  • Small or large mutation

(Difficult to discuss details here; maybe just use as announcement, or combine with modeling approaches)

Univariate models
  • Rate of adaptation
    • From new mutations: fixation probability (Haldane, Kimura, Gomulkiewicz and Kirkpatrick, Orr and Uncless, Uecker and Hermisson)
    • From standing variation (quantitative genetic models): Lande's equation
      • Additive genetic variance (under mutation-selection balance and during evolution); when will additive variance be exhausted?
      • Selection gradients
  • Evolutionary rescue
    • from standing variation or new mutations
    • in models with sudden change
    • in models with moving optimum
    • critical rates of environmental change
  • phenotype vs. fitness
Multivariate models
  • How to model multivariate evolution?
    • Multivariate Lande's/breeders' equation
    • Fisher's geometric model
    • Pleiotropic side effects
  • How many traits? (Organismal complexity)
  • What are the effects of multivariate mutation and selection?
    • G-matrix, M-matrix
    • Evolution of G-matrix
    • Genetic line of least resistance
    • multivariate constraints
    • evolution of mean fitness
  • Evolvability

Plasticity

  • How to model plasticity?
  • How plastic are organisms?
  • How does plasticity interact with genetic evolution?
  • Does plasticity evolve during adaptation?
  • How does plasticity contribute to evolutionary rescue?
Open questions
  • Evolutionary change in a community context
    • Effects of plasticity (trait-mediated indirect effects etc.)
    • Eco-evolutionary dynamics

Questions for empiricists

In all cases, the answer may be quantitative, or may contain a list of factors that influence the result.

  • Overall questions:
    • How fast can adaptation happen?
    • Plastic or genetic adaptation?
    • Evolutionary rescue?
  • How much due to plasticity? (no general answers)
  • Adaptation from standing variation or new mutations?
  • Small or large mutations?
  • How much standing genetic variation?
  • What happens to genetic variance during adaptation?
  • What constrains adaptation?
  • What determined evolvability?
  • Maximal rate of genetic adaptation?
  • Evolutionary rescue due to genetic adaptation?
  • How much plasticity?
  • Will plasticity evolve?
  • Can plasticity enhance genetic adaptation?
  • Evolutionary rescue with plasticity?
  • What happens at the community level?

Questions in Barrett and Hendry (2012)

How important is genetic (as opposed to plastic) change?
  • We might ask: What is possible with genetic change only?
Will plasticity evolve?
  • Most likely yes:-)
  • Approaches: Lande 2009, earlier models from 1990s, Draghi and Whitlock
  • Baldwin effect etc.
Is evolution fast enough
  • How fast without plasticity?
  • Factors determining speed:
    • Genetic variance (large literature here)
    • Selection gradient
    • Multivariate constraints
    • Evolvability, complexity etc.
  • Evolutionary rescue
    • critical rates: explain
    • Explain Lynch and Lande (1993)
    • Key factors: selection gradient vs. mean fitness
    • Strong selection is a good thing with a moving optimum
    • additional factors: demographic and environmental stochasticity
Standing variation vs. new mutations?
  • Different theoretical approaches/traditions
  • Quantitative genetics vs. adaptive walks
  • Some results from quantitative genetics (Hill…)
  • Open questions
How many genes and what effect
  • Lots of recent interest in models of adaptive walks (from new mutations only)
  • Kopp and Hermisson 2009b: at least in univariate case, adaptive walk predictions are good approximations to quantitative genetic model
Constraints: limited genetic variation
  • models on maintenance of genetic variation
Constraints: Trait correlations
  • multivariate constraints
  • Fisher's model etc.
Constraints: Ultimate constraints
  • trade-offs?

What can one say abouts phenotypic rates of adaptation from sgv?

Univariate case

  • Starting point: Lande's equation: selection gradient and additive variance
  • Lot's of literature on additive variance
  • Selection gradient vs. mean fitness: depends on fitness function
    • double exponential fitness function: selection gradient constant
  • Problem: How to deal with phenotypic variance and sampling error? For an observed change to be significant, the difference in haldanes must be <latex>(\bar x - \bar y)/\sigma_p > 1.96\sqrt(2/n)</latex>; for n = 100, this is 0.087.
  • check out Lande 1976, Hendry and Kinnison 1999, Gingerich 2009 for this
  • essentially dividing the Lande equation by sigma_p leads to standardized selection gradients, discussed and critized in Herford et al. 2004

Multivariate case

  • Multivariate Lande's equation
  • critized by Morrisey et al. 2010
  • Multivariate constraints: Walsh and Blows 2009

Narrative

What happens when a populations experiences environmental change, and which theoretical problems do we encounter along the way?

  • Before the change: maintenance of genetic variation (mutation-selection balance, fluctuating selection …)
  • Different kinds of environmental change
  • Adaptation from standing genetic variation
  • Adaptation from new mutations (unlikely)
  • Evolutionary rescue?
  • Plasticity
  • Which factors favor adaptation: genetic variation, plasticity, evolvability, modularity, lack of complexity